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marker_intensity_boxplot

Source: R/marker_intensity_boxplot.R
marker_intensity_boxplot.Rd

Produces boxplots of marker levels for cells phenotyped as being positive for the marker, and those that where phenotyped as being negative.

Usage

marker_intensity_boxplot(sce_object, marker)

Arguments

sce_object

SingleCellExperiment object in the form of the output of format_image_to_sce.

marker

String. Marker being queried.

Value

A plot is returned

Examples

marker_intensity_boxplot(SPIAT::simulated_image, "Immune_marker1")